Variant report

Variant	rs12194501
Chromosome Location	chr6:36262021-36262022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2815806	1.00[CHD][hapmap]
rs28763973	1.00[CHB][hapmap]
rs3752524	1.00[CHB][hapmap]
rs6457879	1.00[CHD][hapmap]
rs916344	1.00[CHD][hapmap]
rs916346	1.00[CHD][hapmap]
rs9394345	1.00[CHB][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36258600-36269200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:36258800-36263800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:36259200-36263600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:36259200-36263600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:36259600-36262800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:36259800-36269200	Weak transcription	Lung	lung
7	chr6:36259800-36270000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:36260200-36263800	Weak transcription	Hela-S3	cervix
9	chr6:36260400-36264400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:36260400-36264600	Weak transcription	Primary B cells from cord blood	blood
11	chr6:36260600-36270000	Weak transcription	Spleen	Spleen
12	chr6:36260600-36280400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:36260800-36270200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:36261600-36265400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:36262000-36262400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:36262000-36262400	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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