Variant report

Variant	rs9394345
Chromosome Location	chr6:36343699-36343700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36341645..36343746-chr6:36562091..36565015,2	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12194501	1.00[CHB][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
2	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
3	chr6:36328400-36345600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:36328400-36351200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
8	chr6:36333800-36353600	Weak transcription	Stomach Mucosa	stomach
9	chr6:36334400-36345600	Strong transcription	Fetal Intestine Small	intestine
10	chr6:36334600-36344200	Weak transcription	Fetal Intestine Large	intestine
11	chr6:36334600-36351000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:36336800-36343800	Weak transcription	Gastric	stomach
13	chr6:36337000-36345400	Weak transcription	Aorta	Aorta
14	chr6:36337200-36348600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:36339200-36354200	Weak transcription	Esophagus	oesophagus
16	chr6:36339800-36353600	Weak transcription	Lung	lung
17	chr6:36341600-36350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:36341800-36350800	Weak transcription	Spleen	Spleen
19	chr6:36342000-36346400	Weak transcription	Fetal Thymus	thymus
20	chr6:36342400-36343800	Enhancers	Fetal Brain Male	brain
21	chr6:36343400-36344000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:36343400-36344200	Enhancers	GM12878-XiMat	blood
23	chr6:36343600-36344200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:36343600-36345600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr6:36343600-36345600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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