Variant report

Variant	rs12197582
Chromosome Location	chr6:145804384-145804385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10457055	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12190323	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195117	0.81[AMR][1000 genomes]
rs12199971	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203609	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12205454	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs13196875	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13200495	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13203662	0.81[EUR][1000 genomes]
rs34312543	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6899772	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71566412	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73579446	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9485004	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs952407	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520619	chr6:145800915-145807907	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv2763962	chr6:145802158-145817051	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145803200-145805200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr6:145803600-145804600	Enhancers	HMEC	breast
3	chr6:145803600-145804600	Enhancers	NHEK	skin
4	chr6:145803800-145804400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:145803800-145804600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:145803800-145805600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:145803800-145805600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:145803800-145806000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:145804000-145804800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:145804000-145805200	Enhancers	Hela-S3	cervix
11	chr6:145804200-145805200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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