Variant report

Variant	rs12198482
Chromosome Location	chr6:15218671-15218672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11755759	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12193844	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs55652102	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62397295	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7453429	0.91[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15208400-15222000	Weak transcription	Right Atrium	heart
2	chr6:15211600-15222200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:15216000-15219000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:15216000-15220200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:15216200-15219000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:15216200-15220200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:15218200-15219400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:15218400-15219200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:15218600-15219200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:15218600-15219800	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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