Variant report

Variant	rs62397295
Chromosome Location	chr6:15194250-15194251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11755759	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12193844	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12198482	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs55652102	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv1011225	chr6:15188151-15198037	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15193600-15195400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:15194000-15194800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:15194000-15195400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr6:15194200-15194600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:15194200-15195200	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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