Variant report

Variant	rs12198609
Chromosome Location	chr6:82300164-82300165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12198522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208456	0.90[EUR][1000 genomes]
rs12213661	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706144	0.85[ASN][1000 genomes]
rs58555568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906639	0.85[ASN][1000 genomes]
rs73750612	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73750616	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7746264	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82299200-82300800	Enhancers	Placenta	Placenta
2	chr6:82299800-82300400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:82299800-82300400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr6:82299800-82300800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:82300000-82300400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:82300000-82300400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:82300000-82300400	Enhancers	Fetal Heart	heart
8	chr6:82300000-82300600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:82300000-82300600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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