Variant report

Variant	rs12208456
Chromosome Location	chr6:82270746-82270747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12198522	0.90[EUR][1000 genomes]
rs12198609	0.90[EUR][1000 genomes]
rs12204212	0.90[EUR][1000 genomes]
rs12213661	0.90[EUR][1000 genomes]
rs58555568	0.90[EUR][1000 genomes]
rs73750612	0.90[EUR][1000 genomes]
rs73750616	0.90[EUR][1000 genomes]
rs7746264	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82261000-82271000	Weak transcription	Aorta	Aorta
2	chr6:82263400-82270800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:82264600-82270800	Weak transcription	Fetal Lung	lung
4	chr6:82266400-82270800	Weak transcription	Osteobl	bone
5	chr6:82266600-82270800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:82266600-82270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:82266600-82270800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:82267400-82271000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:82267600-82271400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:82268000-82274400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:82268800-82270800	Weak transcription	Fetal Stomach	stomach
12	chr6:82270400-82270800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:82270400-82270800	Enhancers	Rectal Smooth Muscle	rectum
14	chr6:82270400-82271000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:82270600-82271200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:82270600-82271200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:82270600-82271400	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr6:82270600-82271600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:82270600-82271600	Enhancers	Colon Smooth Muscle	Colon
20	chr6:82270600-82272000	Enhancers	HSMM	muscle
21	chr6:82270600-82272200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:82270600-82272400	Enhancers	Stomach Mucosa	stomach
23	chr6:82270600-82272400	Enhancers	HepG2	liver
24	chr6:82270600-82272600	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr6:82270600-82272600	Enhancers	Hela-S3	cervix
26	chr6:82270600-82272600	Enhancers	NH-A	brain

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