Variant report
Variant | rs12199725 |
---|---|
Chromosome Location | chr6:85997097-85997098 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:12)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | MAFF | chr6:85997049-85997166 | HepG2 | liver: | n/a | n/a |
2 | FOXA1 | chr6:85996915-85997164 | HepG2 | liver: | n/a | n/a |
3 | RXRA | chr6:85996901-85997198 | HepG2 | liver: | n/a | n/a |
4 | NR2F2 | chr6:85996887-85997273 | HepG2 | liver: | n/a | n/a |
5 | EP300 | chr6:85996900-85997265 | HepG2 | liver: | n/a | n/a |
6 | FOXA2 | chr6:85996958-85997189 | HepG2 | liver: | n/a | n/a |
7 | FOXA1 | chr6:85996909-85997228 | HepG2 | liver: | n/a | n/a |
8 | FOXA1 | chr6:85996817-85997249 | HepG2 | liver: | n/a | n/a |
9 | SP1 | chr6:85996867-85997230 | HepG2 | liver: | n/a | n/a |
10 | FOXA1 | chr6:85996821-85997221 | HepG2 | liver: | n/a | n/a |
11 | RCOR1 | chr6:85997021-85997109 | HepG2 | liver: | n/a | n/a |
12 | RXRA | chr6:85996819-85997159 | HepG2 | liver: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
KRT18P64 | TF binding region |
rs_ID | r2[population] |
---|---|
rs1407155 | 0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1570108 | 0.82[ASN][1000 genomes] |
rs1885016 | 0.82[ASN][1000 genomes] |
rs504604 | 0.82[ASN][1000 genomes] |
rs525779 | 0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
rs554187 | 0.82[ASN][1000 genomes] |
rs559487 | 0.82[ASN][1000 genomes] |
rs562380 | 0.82[ASN][1000 genomes] |
rs6941709 | 0.82[ASN][1000 genomes] |
rs721753 | 0.82[ASN][1000 genomes] |
rs72918312 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1017418 | chr6:85344786-86259540 | Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
2 | nsv538347 | chr6:85344786-86259540 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
3 | nsv1022445 | chr6:85972678-86392968 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 136 gene(s) | inside rSNPs | diseases |
4 | nsv538349 | chr6:85972678-86392968 | Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 136 gene(s) | inside rSNPs | diseases |
5 | nsv830721 | chr6:85987644-86147414 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |