Variant report

Variant	rs72918312
Chromosome Location	chr6:85962795-85962796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10944072	0.80[EUR][1000 genomes]
rs10944073	0.85[EUR][1000 genomes]
rs10944093	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11752482	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12195860	0.85[EUR][1000 genomes]
rs12196763	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12198003	0.88[AMR][1000 genomes]
rs12199725	0.82[ASN][1000 genomes]
rs12204198	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12206706	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12211596	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1332371	0.82[AMR][1000 genomes]
rs1407154	0.87[ASN][1000 genomes]
rs1407155	1.00[ASN][1000 genomes]
rs1535313	0.93[ASN][1000 genomes]
rs1547702	0.93[ASN][1000 genomes]
rs1570108	1.00[ASN][1000 genomes]
rs1853125	0.87[ASN][1000 genomes]
rs1853126	0.87[ASN][1000 genomes]
rs1853129	0.87[ASN][1000 genomes]
rs1853130	0.87[ASN][1000 genomes]
rs1853131	0.87[ASN][1000 genomes]
rs1885016	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958940	0.93[ASN][1000 genomes]
rs1981018	0.93[ASN][1000 genomes]
rs4363008	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4400187	0.87[ASN][1000 genomes]
rs4484492	0.93[ASN][1000 genomes]
rs4707141	0.87[ASN][1000 genomes]
rs4707142	0.87[ASN][1000 genomes]
rs4707143	0.87[ASN][1000 genomes]
rs504604	1.00[ASN][1000 genomes]
rs525779	1.00[ASN][1000 genomes]
rs537411	0.94[ASN][1000 genomes]
rs552249	0.94[ASN][1000 genomes]
rs554187	1.00[ASN][1000 genomes]
rs559487	1.00[ASN][1000 genomes]
rs562380	1.00[ASN][1000 genomes]
rs6454456	0.87[ASN][1000 genomes]
rs6922736	0.87[ASN][1000 genomes]
rs6937238	0.81[ASN][1000 genomes]
rs6941709	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs700499	0.87[ASN][1000 genomes]
rs700500	0.87[ASN][1000 genomes]
rs700502	0.87[ASN][1000 genomes]
rs721753	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753409	0.87[ASN][1000 genomes]
rs7771273	0.87[ASN][1000 genomes]
rs7772310	0.87[ASN][1000 genomes]
rs9342025	0.87[ASN][1000 genomes]
rs9351040	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1020221	chr6:85942790-85964024	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85960400-85962800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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