Variant report

Variant	rs12198003
Chromosome Location	chr6:85876972-85876973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:85871743..85874419-chr6:85874787..85877545,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NT5E-6	chr6:85876897-85877250	NONHSAT113832

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10944065	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10944066	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10944072	0.88[EUR][1000 genomes]
rs10944073	0.93[EUR][1000 genomes]
rs10944093	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11752482	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12195860	0.93[EUR][1000 genomes]
rs12196763	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12198648	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12204198	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12206706	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12211596	0.84[EUR][1000 genomes]
rs1321745	0.94[ASN][1000 genomes]
rs1321747	0.88[ASN][1000 genomes]
rs1321749	0.88[ASN][1000 genomes]
rs1321750	0.88[ASN][1000 genomes]
rs1321751	0.88[ASN][1000 genomes]
rs1321752	0.88[ASN][1000 genomes]
rs1325976	0.84[EUR][1000 genomes]
rs1332371	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1407163	0.96[EUR][1000 genomes]
rs1407168	0.94[ASN][1000 genomes]
rs1590235	0.88[ASN][1000 genomes]
rs1590236	0.88[ASN][1000 genomes]
rs1590237	0.88[ASN][1000 genomes]
rs1885016	0.83[EUR][1000 genomes]
rs4053812	0.88[ASN][1000 genomes]
rs4363008	0.86[EUR][1000 genomes]
rs6925411	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs721753	0.83[EUR][1000 genomes]
rs72912229	0.83[EUR][1000 genomes]
rs72918312	0.88[AMR][1000 genomes]
rs7746677	0.83[EUR][1000 genomes]
rs7750840	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7751010	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7772456	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9344467	0.88[ASN][1000 genomes]
rs9344468	0.88[ASN][1000 genomes]
rs9353253	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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