Variant report

Variant	rs1590236
Chromosome Location	chr6:85902138-85902139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10944094	0.85[EUR][1000 genomes]
rs11752482	0.94[ASN][1000 genomes]
rs12196763	0.94[ASN][1000 genomes]
rs12198003	0.88[ASN][1000 genomes]
rs12198648	1.00[CHB][hapmap]
rs12204198	0.94[ASN][1000 genomes]
rs1321733	0.84[EUR][1000 genomes]
rs1321745	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1321747	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321749	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321750	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407154	0.85[EUR][1000 genomes]
rs1407155	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs1407168	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1535313	0.85[EUR][1000 genomes]
rs1547702	0.85[EUR][1000 genomes]
rs1570108	0.84[EUR][1000 genomes]
rs1590235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853125	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1853126	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1853129	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1853130	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1853131	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1958940	0.85[EUR][1000 genomes]
rs1981018	0.84[EUR][1000 genomes]
rs2210479	0.85[EUR][1000 genomes]
rs4053812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4400187	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4484492	0.85[EUR][1000 genomes]
rs4707141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4707142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4707143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs504604	0.85[EUR][1000 genomes]
rs525779	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs537411	0.84[EUR][1000 genomes]
rs550481	0.85[EUR][1000 genomes]
rs552249	0.84[EUR][1000 genomes]
rs554187	0.85[EUR][1000 genomes]
rs559487	0.84[EUR][1000 genomes]
rs6454456	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs671213	0.85[EUR][1000 genomes]
rs6922736	0.85[EUR][1000 genomes]
rs6937238	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs700499	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs700500	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs700502	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs700506	0.80[EUR][1000 genomes]
rs7753409	0.85[EUR][1000 genomes]
rs7762165	0.83[EUR][1000 genomes]
rs7771273	0.85[EUR][1000 genomes]
rs7772310	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9342025	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9344467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351040	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9353253	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9353292	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv970148	chr6:85901688-85904720	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85897600-85902600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:85900600-85903000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:85901000-85903000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:85901200-85902400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:85901200-85903000	Enhancers	Osteobl	bone
6	chr6:85901600-85902200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:85901600-85902200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:85901600-85902800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:85901600-85902800	Enhancers	NHDF-Ad	bronchial
10	chr6:85901600-85903200	Enhancers	HMEC	breast
11	chr6:85901800-85902800	Enhancers	HSMMtube	muscle
12	chr6:85902000-85902600	Enhancers	HSMM	muscle

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