Variant report

Variant	rs671213
Chromosome Location	chr6:85871171-85871172
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1321745	0.86[EUR][1000 genomes]
rs1321747	0.86[EUR][1000 genomes]
rs1321750	0.85[EUR][1000 genomes]
rs1321751	0.85[EUR][1000 genomes]
rs1321752	0.85[EUR][1000 genomes]
rs1407155	0.83[CEU][hapmap]
rs1407163	1.00[ASN][1000 genomes]
rs1407168	0.87[EUR][1000 genomes]
rs1590235	0.85[EUR][1000 genomes]
rs1590236	0.85[EUR][1000 genomes]
rs1590237	0.85[EUR][1000 genomes]
rs16875813	0.88[ASN][1000 genomes]
rs16875818	0.81[ASN][1000 genomes]
rs1853125	0.83[EUR][1000 genomes]
rs1853126	0.83[EUR][1000 genomes]
rs4053812	0.85[EUR][1000 genomes]
rs4707141	0.85[EUR][1000 genomes]
rs4707142	0.85[EUR][1000 genomes]
rs4707143	0.85[EUR][1000 genomes]
rs525779	0.88[CEU][hapmap]
rs618586	0.87[JPT][hapmap]
rs633322	0.87[JPT][hapmap]
rs662760	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6937238	0.82[EUR][1000 genomes]
rs7741178	0.83[ASN][1000 genomes]
rs7768362	0.83[ASN][1000 genomes]
rs7772310	0.83[EUR][1000 genomes]
rs9344467	0.85[EUR][1000 genomes]
rs9344468	0.85[EUR][1000 genomes]
rs9351040	0.83[EUR][1000 genomes]
rs9353253	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85870600-85871400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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