Variant report
| Variant | rs618586 |
|---|---|
| Chromosome Location | chr6:85862008-85862009 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12213780 | 0.82[ASN][1000 genomes] |
| rs12664883 | 0.99[ASN][1000 genomes] |
| rs1321723 | 0.98[ASN][1000 genomes] |
| rs1321735 | 0.82[ASN][1000 genomes] |
| rs1321736 | 0.82[ASN][1000 genomes] |
| rs1321737 | 0.80[ASN][1000 genomes] |
| rs1407161 | 0.82[ASN][1000 genomes] |
| rs1407162 | 0.80[ASN][1000 genomes] |
| rs16875813 | 0.81[ASN][1000 genomes] |
| rs1926019 | 0.82[ASN][1000 genomes] |
| rs2146272 | 0.82[ASN][1000 genomes] |
| rs4141965 | 0.82[ASN][1000 genomes] |
| rs486470 | 0.98[ASN][1000 genomes] |
| rs504392 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs505007 | 0.98[ASN][1000 genomes] |
| rs510422 | 0.98[ASN][1000 genomes] |
| rs536094 | 0.98[ASN][1000 genomes] |
| rs541665 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs562034 | 0.98[ASN][1000 genomes] |
| rs563365 | 0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs563639 | 0.98[ASN][1000 genomes] |
| rs572893 | 0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs575779 | 0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs633322 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs662760 | 0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6911391 | 0.81[CHB][hapmap] |
| rs6925525 | 0.82[ASN][1000 genomes] |
| rs7745528 | 0.82[ASN][1000 genomes] |
| rs7748912 | 0.95[CHB][hapmap] |
| rs7768040 | 0.82[ASN][1000 genomes] |
| rs9342008 | 0.95[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017418 | chr6:85344786-86259540 | Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv538347 | chr6:85344786-86259540 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
