Variant report

Variant	rs572893
Chromosome Location	chr6:85851983-85851984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:85848371..85850241-chr6:85851742..85853934,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12213780	0.82[ASN][1000 genomes]
rs12664883	0.99[ASN][1000 genomes]
rs1321723	0.98[ASN][1000 genomes]
rs1321735	0.82[ASN][1000 genomes]
rs1321736	0.82[ASN][1000 genomes]
rs1321737	0.80[ASN][1000 genomes]
rs1407161	0.82[ASN][1000 genomes]
rs1407162	0.80[ASN][1000 genomes]
rs16875813	0.81[ASN][1000 genomes]
rs1926019	0.82[ASN][1000 genomes]
rs2146272	0.82[ASN][1000 genomes]
rs4141965	0.82[ASN][1000 genomes]
rs486470	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs504392	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs505007	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs510422	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536094	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs541665	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562034	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs563365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563639	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs571787	0.85[EUR][1000 genomes]
rs575779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581803	0.85[EUR][1000 genomes]
rs593602	0.85[EUR][1000 genomes]
rs594124	0.85[EUR][1000 genomes]
rs608022	0.85[EUR][1000 genomes]
rs618586	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs633322	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs662760	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6911391	0.81[CHB][hapmap]
rs6925525	0.82[ASN][1000 genomes]
rs7745528	0.82[ASN][1000 genomes]
rs7748912	0.95[CHB][hapmap]
rs7768040	0.82[ASN][1000 genomes]
rs9342008	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85846000-85852000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:85848200-85853000	Weak transcription	Osteobl	bone
3	chr6:85848200-85853600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:85849800-85853400	Weak transcription	NHDF-Ad	bronchial
5	chr6:85850400-85852000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links