Variant report

Variant	rs504392
Chromosome Location	chr6:85865388-85865389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NT5E-6	chr6:85865385-85865538	NONHSAT113832

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12213780	0.80[ASN][1000 genomes]
rs12664883	0.97[ASN][1000 genomes]
rs1321723	0.96[ASN][1000 genomes]
rs1321735	0.80[ASN][1000 genomes]
rs1321736	0.80[ASN][1000 genomes]
rs1321737	0.82[ASN][1000 genomes]
rs1407161	0.80[ASN][1000 genomes]
rs1407162	0.82[ASN][1000 genomes]
rs16875813	0.83[ASN][1000 genomes]
rs2146272	0.80[ASN][1000 genomes]
rs4141965	0.80[ASN][1000 genomes]
rs486470	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs505007	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs510422	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs536094	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs541665	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs562034	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs563365	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs563639	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs571787	0.85[EUR][1000 genomes]
rs572893	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs575779	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs581803	0.85[EUR][1000 genomes]
rs593602	0.85[EUR][1000 genomes]
rs594124	0.85[EUR][1000 genomes]
rs608022	0.85[EUR][1000 genomes]
rs618586	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs633322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs662760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6911391	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs6925525	0.80[ASN][1000 genomes]
rs7748912	0.82[CHB][hapmap]
rs7768040	0.80[ASN][1000 genomes]
rs9342008	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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