Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NT5E-6	chr6:85871417-85871518	NONHSAT113832

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10944065	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10944066	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10944072	0.84[EUR][1000 genomes]
rs10944073	0.90[EUR][1000 genomes]
rs11752482	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12195860	0.90[EUR][1000 genomes]
rs12196763	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12198003	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12198648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204198	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12211596	0.82[EUR][1000 genomes]
rs1325976	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332371	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407155	1.00[CHB][hapmap]
rs1407163	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4363008	0.84[EUR][1000 genomes]
rs525779	1.00[CHB][hapmap]
rs6925411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912229	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746677	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7750840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772456	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85871400-85872000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:85871400-85872400	Enhancers	Brain Germinal Matrix	brain

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