Variant report

Variant	rs12211596
Chromosome Location	chr6:85904897-85904898
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10944072	0.85[EUR][1000 genomes]
rs10944073	0.90[EUR][1000 genomes]
rs10944093	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752482	0.85[EUR][1000 genomes]
rs12195860	0.90[EUR][1000 genomes]
rs12196763	0.90[EUR][1000 genomes]
rs12198003	0.84[EUR][1000 genomes]
rs12198648	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12199725	0.85[JPT][hapmap]
rs12204198	0.90[EUR][1000 genomes]
rs12206706	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321753	0.89[EUR][1000 genomes]
rs1332371	0.82[EUR][1000 genomes]
rs1407154	1.00[ASN][1000 genomes]
rs1407155	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1407163	0.82[EUR][1000 genomes]
rs1535313	0.93[ASN][1000 genomes]
rs1547702	0.93[ASN][1000 genomes]
rs1570108	0.87[ASN][1000 genomes]
rs1853125	1.00[ASN][1000 genomes]
rs1853126	1.00[ASN][1000 genomes]
rs1853129	1.00[ASN][1000 genomes]
rs1853130	1.00[ASN][1000 genomes]
rs1853131	1.00[ASN][1000 genomes]
rs1885016	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1958940	0.93[ASN][1000 genomes]
rs1981018	0.93[ASN][1000 genomes]
rs4363008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4400187	1.00[ASN][1000 genomes]
rs4484492	0.93[ASN][1000 genomes]
rs4707141	1.00[ASN][1000 genomes]
rs4707142	1.00[ASN][1000 genomes]
rs4707143	1.00[ASN][1000 genomes]
rs504604	0.87[ASN][1000 genomes]
rs525779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs537411	0.81[ASN][1000 genomes]
rs552249	0.81[ASN][1000 genomes]
rs554187	0.87[ASN][1000 genomes]
rs559487	0.87[ASN][1000 genomes]
rs562380	0.87[ASN][1000 genomes]
rs6454456	1.00[ASN][1000 genomes]
rs6922736	0.87[ASN][1000 genomes]
rs6925411	0.82[EUR][1000 genomes]
rs6937238	0.94[ASN][1000 genomes]
rs6941709	0.87[ASN][1000 genomes]
rs700499	1.00[ASN][1000 genomes]
rs700500	1.00[ASN][1000 genomes]
rs700502	1.00[ASN][1000 genomes]
rs721753	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72918312	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7750840	0.82[EUR][1000 genomes]
rs7751010	0.82[EUR][1000 genomes]
rs7753409	1.00[ASN][1000 genomes]
rs7771273	1.00[ASN][1000 genomes]
rs7772310	1.00[ASN][1000 genomes]
rs9342025	1.00[ASN][1000 genomes]
rs9351040	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85904800-85905200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:85904800-85905400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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