Variant report

Variant	rs12200100
Chromosome Location	chr6:131451986-131451987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10457566	0.80[AMR][1000 genomes]
rs12205351	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12207007	0.80[AMR][1000 genomes]
rs12211363	0.80[AMR][1000 genomes]
rs35111535	0.80[AMR][1000 genomes]
rs72989868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72989873	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9492820	0.94[EUR][1000 genomes]
rs9492821	0.94[EUR][1000 genomes]
rs9492822	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1019112	chr6:131409284-131452300	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761029	chr6:131413789-131452312	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016925	chr6:131418532-131452300	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131446000-131456200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:131447200-131455800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:131449000-131456000	Weak transcription	Fetal Brain Male	brain
4	chr6:131450800-131452000	Enhancers	Liver	Liver
5	chr6:131451000-131452000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:131451200-131452400	Enhancers	HSMM	muscle
7	chr6:131451200-131455800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:131451400-131452400	Enhancers	Fetal Muscle Leg	muscle
9	chr6:131451400-131455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:131451400-131455600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:131451600-131455600	Weak transcription	HMEC	breast
12	chr6:131451600-131455800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:131451600-131455800	Weak transcription	HSMMtube	muscle
14	chr6:131451600-131455800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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