Variant report

Variant	rs10457566
Chromosome Location	chr6:131401611-131401612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10456991	1.00[ASN][1000 genomes]
rs10457565	1.00[ASN][1000 genomes]
rs12193575	1.00[ASN][1000 genomes]
rs12193685	1.00[ASN][1000 genomes]
rs12198862	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200100	0.80[AMR][1000 genomes]
rs12202022	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202345	1.00[ASN][1000 genomes]
rs12204522	1.00[ASN][1000 genomes]
rs12205351	0.80[AMR][1000 genomes]
rs12207007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210131	1.00[ASN][1000 genomes]
rs12211363	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212907	1.00[ASN][1000 genomes]
rs12213224	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214117	1.00[ASN][1000 genomes]
rs13191751	1.00[ASN][1000 genomes]
rs13193708	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194156	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13199082	1.00[ASN][1000 genomes]
rs13205393	1.00[ASN][1000 genomes]
rs13214846	1.00[ASN][1000 genomes]
rs13218427	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219477	1.00[ASN][1000 genomes]
rs34206551	1.00[ASN][1000 genomes]
rs34948572	1.00[ASN][1000 genomes]
rs35061946	1.00[ASN][1000 genomes]
rs35089988	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35916985	1.00[ASN][1000 genomes]
rs6935560	1.00[ASN][1000 genomes]
rs71572945	1.00[ASN][1000 genomes]
rs71572950	1.00[ASN][1000 genomes]
rs72989868	0.80[AMR][1000 genomes]
rs72989873	0.80[AMR][1000 genomes]
rs7760822	1.00[ASN][1000 genomes]
rs7767569	1.00[ASN][1000 genomes]
rs9885632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv10623	chr6:131397221-131418195	Active TSS Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131401400-131401800	Active TSS	HepG2	liver

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