Variant report

Variant	rs13214846
Chromosome Location	chr6:131327446-131327447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10456991	1.00[ASN][1000 genomes]
rs10457565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457566	1.00[ASN][1000 genomes]
rs12192664	1.00[ASN][1000 genomes]
rs12193575	1.00[ASN][1000 genomes]
rs12193685	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198862	1.00[ASN][1000 genomes]
rs12202022	1.00[ASN][1000 genomes]
rs12202345	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204522	1.00[ASN][1000 genomes]
rs12207007	1.00[ASN][1000 genomes]
rs12210131	1.00[ASN][1000 genomes]
rs12210483	1.00[ASN][1000 genomes]
rs12211363	1.00[ASN][1000 genomes]
rs12212907	1.00[ASN][1000 genomes]
rs12213224	1.00[ASN][1000 genomes]
rs12214117	1.00[ASN][1000 genomes]
rs13191751	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193708	1.00[ASN][1000 genomes]
rs13199082	1.00[ASN][1000 genomes]
rs13205393	1.00[ASN][1000 genomes]
rs13218427	1.00[ASN][1000 genomes]
rs13219477	1.00[ASN][1000 genomes]
rs34206551	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34948572	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35061946	1.00[ASN][1000 genomes]
rs35089988	1.00[ASN][1000 genomes]
rs35111535	1.00[ASN][1000 genomes]
rs35916985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921542	0.81[AFR][1000 genomes]
rs6935560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71572945	1.00[ASN][1000 genomes]
rs71572950	1.00[ASN][1000 genomes]
rs7760822	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767569	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375794	0.83[AFR][1000 genomes]
rs954919	0.85[AFR][1000 genomes]
rs9885632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131318800-131328000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:131318800-131329200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:131322600-131333200	Weak transcription	Pancreas	Pancrea
4	chr6:131323600-131327800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:131323600-131328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:131323800-131328000	Weak transcription	A549	lung
7	chr6:131323800-131328200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:131324000-131334200	Weak transcription	Small Intestine	intestine
9	chr6:131324800-131328000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:131325200-131328000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:131325400-131327800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:131326000-131328000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:131326000-131328000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:131326000-131329400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:131326000-131333800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:131326200-131328000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:131326200-131328400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:131326400-131328000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:131326600-131327800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:131326600-131328000	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:131327000-131328000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:131327000-131331200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:131327000-131333200	Weak transcription	Ovary	ovary
24	chr6:131327200-131328000	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:131327200-131328000	Weak transcription	Fetal Stomach	stomach
26	chr6:131327400-131328000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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