Variant report

Variant	rs12213224
Chromosome Location	chr6:131369536-131369537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131363706..131366230-chr6:131367411..131369715,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10456991	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10457565	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10457566	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193575	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193685	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12198862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202022	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202345	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12204522	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207007	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210131	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210483	1.00[ASN][1000 genomes]
rs12211363	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12212907	1.00[ASN][1000 genomes]
rs12214117	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13191751	1.00[ASN][1000 genomes]
rs13193708	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194156	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13199082	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205393	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13214846	1.00[ASN][1000 genomes]
rs13218427	1.00[ASN][1000 genomes]
rs13219477	1.00[ASN][1000 genomes]
rs34206551	1.00[ASN][1000 genomes]
rs34948572	1.00[ASN][1000 genomes]
rs35061946	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35089988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111535	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35291891	0.83[EUR][1000 genomes]
rs35916985	1.00[ASN][1000 genomes]
rs6935560	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs71572945	1.00[ASN][1000 genomes]
rs71572950	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760822	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7767569	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs9885632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131346000-131375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:131351400-131375000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:131351600-131374600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:131352400-131374400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:131356600-131375000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:131359000-131374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:131360800-131370000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:131360800-131374800	Weak transcription	HSMM	muscle
9	chr6:131360800-131375000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:131361400-131373800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:131363800-131371400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:131364000-131372200	Weak transcription	NHLF	lung
13	chr6:131364200-131370000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:131364400-131369600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:131364400-131370000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:131364400-131372600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:131364400-131374600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:131364600-131369600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:131364800-131369600	Weak transcription	NHDF-Ad	bronchial
20	chr6:131367800-131374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:131368000-131369600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:131368000-131370000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:131368000-131372600	Weak transcription	HepG2	liver
24	chr6:131368200-131374800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:131368200-131375200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:131368800-131370800	Enhancers	Adipose Nuclei	Adipose
27	chr6:131369200-131372600	Weak transcription	Ovary	ovary
28	chr6:131369400-131370400	Enhancers	Brain Anterior Caudate	brain
29	chr6:131369400-131371000	Enhancers	Brain Hippocampus Middle	brain
30	chr6:131369400-131371000	Enhancers	Brain Substantia Nigra	brain

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