Variant report

Variant	rs12200710
Chromosome Location	chr6:13846476-13846477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1204180	0.99[ASN][1000 genomes]
rs1204184	0.84[EUR][1000 genomes]
rs1924461	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6899735	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6903075	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6904311	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6924753	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357909	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9367682	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370526	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3475107	chr6:13834840-13863839	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3475109	chr6:13835023-13863759	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13839200-13847200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:13839200-13847200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:13841000-13848800	Weak transcription	Fetal Lung	lung
4	chr6:13842400-13846800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:13842600-13847200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:13842600-13847200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:13842600-13847200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:13842800-13847200	Weak transcription	K562	blood
9	chr6:13842800-13849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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