Variant report

Variant	rs9367682
Chromosome Location	chr6:13842375-13842376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1204180	0.98[ASN][1000 genomes]
rs1204184	0.84[EUR][1000 genomes]
rs12200710	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1924461	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6899735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6903075	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904311	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6924753	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357909	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9370526	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3475107	chr6:13834840-13863839	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3475109	chr6:13835023-13863759	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13839200-13847200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:13839200-13847200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:13841000-13848800	Weak transcription	Fetal Lung	lung
4	chr6:13841400-13842400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:13841600-13842400	Enhancers	A549	lung
6	chr6:13841600-13842400	Bivalent Enhancer	HSMMtube	muscle
7	chr6:13841600-13842600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:13841600-13842600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:13841600-13842600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:13841600-13842800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:13841600-13842800	Enhancers	K562	blood
12	chr6:13841800-13842400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:13841800-13842400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:13841800-13842400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:13841800-13842400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:13841800-13842400	Enhancers	HMEC	breast
17	chr6:13841800-13842400	Enhancers	NHDF-Ad	bronchial
18	chr6:13841800-13842600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:13841800-13842600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:13842000-13842400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:13842000-13842400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:13842000-13842600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr6:13842200-13842600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:13842200-13843000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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