Variant report

Variant	rs12200757
Chromosome Location	chr6:109651220-109651221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4946957	0.80[CEU][hapmap]
rs4946962	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:109641000-109653600	Weak transcription	Small Intestine	intestine
3	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:109644800-109657400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:109645400-109653600	Weak transcription	Spleen	Spleen
6	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
7	chr6:109647200-109651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:109647600-109651400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:109649200-109654000	Weak transcription	K562	blood
10	chr6:109649600-109653800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:109650200-109653000	Weak transcription	Fetal Intestine Large	intestine
12	chr6:109650200-109653600	Weak transcription	HepG2	liver
13	chr6:109650200-109653800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:109650600-109653000	Weak transcription	Fetal Intestine Small	intestine
15	chr6:109651200-109651400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:109651200-109652000	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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