Variant report

Variant	rs12201513
Chromosome Location	chr6:153842309-153842310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12192455	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194704	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12195755	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196328	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197093	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199157	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203713	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12208443	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208691	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210058	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12210767	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12212811	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12215391	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215451	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215512	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215742	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17308647	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17309207	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2035005	0.90[EUR][1000 genomes]
rs2085675	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100719	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3849800	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3899493	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4410735	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62436386	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62436388	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62436392	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62436406	0.85[AMR][1000 genomes]
rs62436407	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7450597	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916080	chr6:153650242-153881059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv915884	chr6:153717053-153979225	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3529752	chr6:153733306-154425819	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3529753	chr6:153733306-154425819	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv886781	chr6:153748334-153844303	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv886782	chr6:153757736-153855165	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv970356	chr6:153814015-153850061	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv2762622	chr6:153817266-153869314	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv520116	chr6:153822736-153866043	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:153842200-153842600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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