Variant report

Variant	rs62436407
Chromosome Location	chr6:153807817-153807818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:153801852..153804495-chr6:153807281..153809630,2	K562	blood:
2	chr6:153806444..153808679-chr6:153811134..153812918,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12192455	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12194481	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12194704	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195755	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12196328	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12197093	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12199157	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201513	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203713	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208443	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12208691	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12210058	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210767	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212811	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215391	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12215451	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12215512	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12215625	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12215742	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17308647	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17309207	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035005	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085675	0.88[EUR][1000 genomes]
rs2100719	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3849800	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3899493	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4410735	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436385	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436386	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436388	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436392	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436406	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7450597	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916080	chr6:153650242-153881059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv915884	chr6:153717053-153979225	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3529752	chr6:153733306-154425819	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3529753	chr6:153733306-154425819	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv886780	chr6:153748334-153822736	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886781	chr6:153748334-153844303	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv604915	chr6:153753285-153830536	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886782	chr6:153757736-153855165	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv464083	chr6:153777546-153810803	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv464085	chr6:153777546-153810803	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604916	chr6:153777546-153810803	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1819580	chr6:153793306-153817811	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:153805400-153808200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links