Variant report

Variant	rs12203324
Chromosome Location	chr6:133935820-133935821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10872411	0.82[EUR][1000 genomes]
rs12194886	0.82[EUR][1000 genomes]
rs12203264	0.82[EUR][1000 genomes]
rs12207690	0.82[EUR][1000 genomes]
rs12207826	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133932200-133944200	Weak transcription	NH-A	brain
2	chr6:133934000-133936200	Enhancers	Fetal Lung	lung
3	chr6:133934600-133936400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:133935000-133936000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:133935000-133936200	Enhancers	Ovary	ovary
6	chr6:133935000-133936800	Weak transcription	A549	lung
7	chr6:133935400-133936000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:133935400-133936200	Enhancers	Placenta	Placenta
9	chr6:133935400-133936200	Enhancers	Fetal Stomach	stomach
10	chr6:133935400-133936600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:133935400-133936800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:133935600-133936200	Enhancers	Fetal Muscle Trunk	muscle
13	chr6:133935800-133936600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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