Variant report

Variant	rs10872411
Chromosome Location	chr6:133930382-133930383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133929403..133932343-chr6:133932388..133934855,2	K562	blood:
2	chr6:133925722..133928960-chr6:133929077..133930766,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10457608	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10457609	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782252	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10782253	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10782254	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10872410	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190055	0.94[EUR][1000 genomes]
rs12191306	0.92[EUR][1000 genomes]
rs12193686	0.94[EUR][1000 genomes]
rs12194247	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194817	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12194886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195870	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12195892	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196164	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198984	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12200438	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201171	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12201623	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201875	0.91[EUR][1000 genomes]
rs12202735	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203324	0.82[EUR][1000 genomes]
rs12204957	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12205960	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206565	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206990	0.94[EUR][1000 genomes]
rs12207502	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207687	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212162	0.92[EUR][1000 genomes]
rs12212442	0.89[EUR][1000 genomes]
rs12212992	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12215554	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215845	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216357	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17062823	0.91[EUR][1000 genomes]
rs1884162	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321410	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483596	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483606	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493679	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493707	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493717	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133925200-133930800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:133927000-133932000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:133928000-133930400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:133929000-133931600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:133929000-133935600	Enhancers	Hela-S3	cervix
6	chr6:133929800-133931200	Enhancers	A549	lung
7	chr6:133930000-133930400	Flanking Active TSS	Fetal Lung	lung
8	chr6:133930000-133933000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:133930200-133930400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:133930200-133931200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:133930200-133932400	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links