Variant report
| Variant | rs12212162 |
|---|---|
| Chromosome Location | chr6:133975719-133975720 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10457609 | 0.89[EUR][1000 genomes] |
| rs10872410 | 0.86[EUR][1000 genomes] |
| rs10872411 | 0.92[EUR][1000 genomes] |
| rs12190055 | 0.86[EUR][1000 genomes] |
| rs12191306 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12193686 | 0.86[EUR][1000 genomes] |
| rs12194247 | 0.86[EUR][1000 genomes] |
| rs12194886 | 0.92[EUR][1000 genomes] |
| rs12195892 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12196164 | 0.94[EUR][1000 genomes] |
| rs12200438 | 0.86[EUR][1000 genomes] |
| rs12201623 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12201875 | 0.83[EUR][1000 genomes] |
| rs12202735 | 0.86[EUR][1000 genomes] |
| rs12203264 | 0.92[EUR][1000 genomes] |
| rs12205960 | 0.94[EUR][1000 genomes] |
| rs12206565 | 0.86[EUR][1000 genomes] |
| rs12206990 | 0.86[EUR][1000 genomes] |
| rs12207502 | 0.86[EUR][1000 genomes] |
| rs12207687 | 0.94[EUR][1000 genomes] |
| rs12207690 | 0.92[EUR][1000 genomes] |
| rs12207826 | 0.92[EUR][1000 genomes] |
| rs12212442 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12215554 | 0.86[EUR][1000 genomes] |
| rs12215845 | 0.86[EUR][1000 genomes] |
| rs12216357 | 0.84[EUR][1000 genomes] |
| rs17062823 | 0.83[EUR][1000 genomes] |
| rs1884162 | 0.86[EUR][1000 genomes] |
| rs9321410 | 0.86[EUR][1000 genomes] |
| rs9483596 | 0.94[EUR][1000 genomes] |
| rs9483606 | 0.86[EUR][1000 genomes] |
| rs9493679 | 0.94[EUR][1000 genomes] |
| rs9493707 | 0.86[EUR][1000 genomes] |
| rs9493717 | 0.86[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:133970400-133976000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 2 | chr6:133975600-133976200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
