Variant report

Variant	rs1884162
Chromosome Location	chr6:134023399-134023400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1001101	0.90[AFR][1000 genomes]
rs10457608	1.00[ASN][1000 genomes]
rs10457609	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782252	1.00[ASN][1000 genomes]
rs10782253	1.00[ASN][1000 genomes]
rs10782254	1.00[ASN][1000 genomes]
rs10872410	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872411	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190055	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12191306	0.86[EUR][1000 genomes]
rs12193686	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12194247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194817	1.00[ASN][1000 genomes]
rs12194886	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195870	1.00[ASN][1000 genomes]
rs12195892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196164	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198984	1.00[ASN][1000 genomes]
rs12200438	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201171	1.00[ASN][1000 genomes]
rs12201623	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201875	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12202735	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203264	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204957	1.00[ASN][1000 genomes]
rs12205960	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206565	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206990	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12207502	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207687	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207690	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207826	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212162	0.86[EUR][1000 genomes]
rs12212442	0.84[EUR][1000 genomes]
rs12212992	1.00[ASN][1000 genomes]
rs12215554	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215845	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216357	0.86[EUR][1000 genomes]
rs17062823	0.97[EUR][1000 genomes]
rs9321410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483596	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483606	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483612	0.84[EUR][1000 genomes]
rs9493679	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493703	0.90[AFR][1000 genomes]
rs9493707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493717	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134002400-134028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134020600-134028600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:134022000-134024400	Flanking Active TSS	K562	blood
4	chr6:134022400-134023400	Enhancers	HSMM	muscle
5	chr6:134022600-134023400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:134022600-134023600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:134022600-134024000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:134022800-134023800	Enhancers	NHDF-Ad	bronchial
9	chr6:134022800-134024400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:134023000-134023600	Enhancers	Osteobl	bone
11	chr6:134023200-134023400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:134023200-134023800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:134023200-134023800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:134023200-134025200	Weak transcription	Fetal Stomach	stomach
15	chr6:134023200-134025200	Weak transcription	HSMMtube	muscle
16	chr6:134023200-134025200	Weak transcription	NHLF	lung
17	chr6:134023200-134027000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:134023200-134040400	Weak transcription	Ovary	ovary

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