Variant report

Variant	rs12201171
Chromosome Location	chr6:133911669-133911670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10457608	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457609	1.00[ASN][1000 genomes]
rs10782252	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782253	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782254	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872410	1.00[ASN][1000 genomes]
rs10872411	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12194247	1.00[ASN][1000 genomes]
rs12194817	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194886	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12195870	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195892	1.00[ASN][1000 genomes]
rs12196164	1.00[ASN][1000 genomes]
rs12198984	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200438	1.00[ASN][1000 genomes]
rs12201623	1.00[ASN][1000 genomes]
rs12202735	1.00[ASN][1000 genomes]
rs12203264	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12204957	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205960	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12206565	1.00[ASN][1000 genomes]
rs12207502	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207687	1.00[ASN][1000 genomes]
rs12207690	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207826	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12212992	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215554	1.00[ASN][1000 genomes]
rs12215845	1.00[ASN][1000 genomes]
rs1884162	1.00[ASN][1000 genomes]
rs56309424	0.91[AFR][1000 genomes]
rs59847193	0.97[AFR][1000 genomes]
rs60747295	0.97[AFR][1000 genomes]
rs73773606	0.97[AFR][1000 genomes]
rs73776063	0.97[AFR][1000 genomes]
rs73776064	0.97[AFR][1000 genomes]
rs73776066	0.94[AFR][1000 genomes]
rs9321410	1.00[ASN][1000 genomes]
rs9483596	1.00[ASN][1000 genomes]
rs9483606	1.00[ASN][1000 genomes]
rs9493679	1.00[ASN][1000 genomes]
rs9493707	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133906000-133912000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:133908200-133911800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:133908400-133911800	Weak transcription	Fetal Stomach	stomach
4	chr6:133908600-133911800	Weak transcription	NHLF	lung
5	chr6:133909600-133912200	Weak transcription	NHDF-Ad	bronchial
6	chr6:133909800-133912000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:133909800-133912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:133910400-133913400	Weak transcription	Fetal Lung	lung
9	chr6:133911200-133912000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:133911200-133914000	Enhancers	HMEC	breast
11	chr6:133911400-133911800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:133911400-133911800	Active TSS	A549	lung
13	chr6:133911400-133912000	Flanking Active TSS	NHEK	skin
14	chr6:133911400-133912400	Enhancers	Fetal Kidney	kidney
15	chr6:133911400-133912800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:133911400-133913800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:133911400-133913800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:133911600-133912200	Weak transcription	HSMM	muscle
19	chr6:133911600-133912200	Enhancers	HSMMtube	muscle
20	chr6:133911600-133912200	Enhancers	Osteobl	bone
21	chr6:133911600-133912400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:133911600-133912600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:133911600-133912800	Enhancers	Hela-S3	cervix
24	chr6:133911600-133913600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:133911600-133914000	Enhancers	Muscle Satellite Cultured Cells	--

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