Variant report

Variant	rs12195870
Chromosome Location	chr6:133909287-133909288
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10457608	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457609	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10782252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872410	1.00[ASN][1000 genomes]
rs10872411	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12190055	1.00[AFR][1000 genomes]
rs12191306	1.00[AFR][1000 genomes]
rs12193686	1.00[AFR][1000 genomes]
rs12194247	1.00[ASN][1000 genomes]
rs12194817	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12195892	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12196164	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12198984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200438	1.00[ASN][1000 genomes]
rs12201171	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201623	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12201875	1.00[AFR][1000 genomes]
rs12202735	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12203264	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12204957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12206565	1.00[ASN][1000 genomes]
rs12207502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207687	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12212992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215554	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12215845	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12216357	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1884162	1.00[ASN][1000 genomes]
rs9321410	1.00[ASN][1000 genomes]
rs9483596	1.00[ASN][1000 genomes]
rs9483606	1.00[ASN][1000 genomes]
rs9493679	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9493707	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:133904800-133909800	Enhancers	Fetal Lung	lung
3	chr6:133906000-133912000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:133907200-133911400	Weak transcription	Fetal Kidney	kidney
5	chr6:133908000-133909600	Enhancers	NHDF-Ad	bronchial
6	chr6:133908200-133909800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:133908200-133909800	Enhancers	Osteobl	bone
8	chr6:133908200-133911800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:133908400-133911800	Weak transcription	Fetal Stomach	stomach
10	chr6:133908600-133909600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:133908600-133911600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:133908600-133911600	Weak transcription	HSMMtube	muscle
13	chr6:133908600-133911800	Weak transcription	NHLF	lung
14	chr6:133908800-133909800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:133908800-133909800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:133908800-133910800	Enhancers	A549	lung
17	chr6:133909000-133909400	Weak transcription	HSMM	muscle
18	chr6:133909200-133909800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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