Variant report

Variant	rs12201875
Chromosome Location	chr6:134077829-134077830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134076418..134078236-chr6:134080183..134082934,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10457608	1.00[AFR][1000 genomes]
rs10457609	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10782252	1.00[AFR][1000 genomes]
rs10782253	1.00[AFR][1000 genomes]
rs10782254	1.00[AFR][1000 genomes]
rs10872410	0.86[EUR][1000 genomes]
rs10872411	0.91[EUR][1000 genomes]
rs12190055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191306	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12193686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194247	0.97[EUR][1000 genomes]
rs12194886	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12195870	1.00[AFR][1000 genomes]
rs12195892	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12196164	0.88[EUR][1000 genomes]
rs12198984	1.00[AFR][1000 genomes]
rs12200438	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12201623	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12202735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12203264	0.91[EUR][1000 genomes]
rs12204957	1.00[AFR][1000 genomes]
rs12205960	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12206565	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12206990	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207502	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12207687	0.88[EUR][1000 genomes]
rs12207690	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12207826	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12212162	0.83[EUR][1000 genomes]
rs12212442	0.81[EUR][1000 genomes]
rs12212992	1.00[AFR][1000 genomes]
rs12215554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12215845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12216357	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17062823	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1884162	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61729591	1.00[AFR][1000 genomes]
rs9321410	0.97[EUR][1000 genomes]
rs9483596	0.88[EUR][1000 genomes]
rs9483606	0.97[EUR][1000 genomes]
rs9483612	0.81[EUR][1000 genomes]
rs9493679	0.88[EUR][1000 genomes]
rs9493707	0.97[EUR][1000 genomes]
rs9493717	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134068600-134082200	Weak transcription	Aorta	Aorta
2	chr6:134070400-134082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:134072200-134082200	Enhancers	Fetal Lung	lung
4	chr6:134072600-134079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:134072800-134079600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:134073000-134078200	Enhancers	Fetal Kidney	kidney
7	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:134073600-134080000	Weak transcription	A549	lung
9	chr6:134076200-134078800	Enhancers	HSMM	muscle
10	chr6:134076200-134079000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:134076200-134079000	Weak transcription	Ovary	ovary
12	chr6:134076400-134078200	Enhancers	NHDF-Ad	bronchial
13	chr6:134076400-134079200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:134076400-134079200	Enhancers	Osteobl	bone
15	chr6:134076800-134078400	Enhancers	Fetal Stomach	stomach
16	chr6:134076800-134079200	Enhancers	Adipose Nuclei	Adipose
17	chr6:134077200-134078000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:134077200-134079200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:134077600-134078000	Weak transcription	HSMMtube	muscle
20	chr6:134077600-134078000	Weak transcription	NHLF	lung
21	chr6:134077800-134078000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr6:134077800-134078600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:134077800-134085600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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