Variant report

Variant	rs12191306
Chromosome Location	chr6:133970029-133970030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10457608	1.00[AFR][1000 genomes]
rs10457609	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10782252	1.00[AFR][1000 genomes]
rs10782253	1.00[AFR][1000 genomes]
rs10782254	1.00[AFR][1000 genomes]
rs10872410	0.86[EUR][1000 genomes]
rs10872411	0.92[EUR][1000 genomes]
rs12190055	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12193686	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12194247	0.86[EUR][1000 genomes]
rs12194886	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12195870	1.00[AFR][1000 genomes]
rs12195892	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12196164	0.94[EUR][1000 genomes]
rs12198984	1.00[AFR][1000 genomes]
rs12200438	0.86[EUR][1000 genomes]
rs12201623	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12201875	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12202735	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12203264	0.92[EUR][1000 genomes]
rs12204957	1.00[AFR][1000 genomes]
rs12205960	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12206565	0.86[EUR][1000 genomes]
rs12206990	0.86[EUR][1000 genomes]
rs12207502	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12207687	0.94[EUR][1000 genomes]
rs12207690	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12207826	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12212162	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212442	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212992	1.00[AFR][1000 genomes]
rs12215554	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12215845	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12216357	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17062823	0.83[EUR][1000 genomes]
rs1884162	0.86[EUR][1000 genomes]
rs9321410	0.86[EUR][1000 genomes]
rs9483596	0.94[EUR][1000 genomes]
rs9483606	0.86[EUR][1000 genomes]
rs9493679	0.94[EUR][1000 genomes]
rs9493707	0.86[EUR][1000 genomes]
rs9493717	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133963000-133970200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:133965400-133970400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:133969400-133970200	Enhancers	NHDF-Ad	bronchial
4	chr6:133969600-133970200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:133970000-133970400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:133970000-133970600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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