Variant report

Variant	rs9321410
Chromosome Location	chr6:133998133-133998134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC2A12-10	chr6:133997867-133998567	NONHSAT115001

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10457608	1.00[ASN][1000 genomes]
rs10457609	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782252	1.00[ASN][1000 genomes]
rs10782253	1.00[ASN][1000 genomes]
rs10782254	1.00[ASN][1000 genomes]
rs10872410	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872411	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190055	1.00[EUR][1000 genomes]
rs12191306	0.86[EUR][1000 genomes]
rs12193686	1.00[EUR][1000 genomes]
rs12194247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194817	1.00[ASN][1000 genomes]
rs12194886	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195870	1.00[ASN][1000 genomes]
rs12195892	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196164	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198984	1.00[ASN][1000 genomes]
rs12200438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201171	1.00[ASN][1000 genomes]
rs12201623	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201875	0.97[EUR][1000 genomes]
rs12202735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203264	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204957	1.00[ASN][1000 genomes]
rs12205960	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206990	1.00[EUR][1000 genomes]
rs12207502	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207687	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207690	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207826	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212162	0.86[EUR][1000 genomes]
rs12212442	0.84[EUR][1000 genomes]
rs12212992	1.00[ASN][1000 genomes]
rs12215554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216357	0.86[EUR][1000 genomes]
rs17062823	0.97[EUR][1000 genomes]
rs1884162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731379	0.85[AFR][1000 genomes]
rs9483596	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483605	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9483606	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483612	0.84[EUR][1000 genomes]
rs9493679	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493696	0.95[AFR][1000 genomes]
rs9493697	0.91[AFR][1000 genomes]
rs9493699	0.91[AFR][1000 genomes]
rs9493701	0.95[AFR][1000 genomes]
rs9493702	0.86[AFR][1000 genomes]
rs9493704	0.82[AFR][1000 genomes]
rs9493705	0.84[AFR][1000 genomes]
rs9493706	0.84[AFR][1000 genomes]
rs9493707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493708	0.83[AFR][1000 genomes]
rs9493717	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9321410	HSPA6	trans	brain	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133994400-134001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:133994600-134000000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:133994600-134001800	Weak transcription	Ovary	ovary
4	chr6:133996200-134002400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:133996200-134002400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:133996400-134000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:133996400-134002800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:133996800-134000000	Weak transcription	Fetal Kidney	kidney
9	chr6:133997400-134000800	Weak transcription	Fetal Lung	lung

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