Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134015981..134018039-chr6:134018709..134021575,3	K562	blood:
2	chr6:134011870..134014344-chr6:134017659..134020361,3	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10046175	0.89[AFR][1000 genomes]
rs28446035	0.90[AFR][1000 genomes]
rs56790613	0.86[AFR][1000 genomes]
rs731379	0.99[AFR][1000 genomes]
rs9321410	0.86[AFR][1000 genomes]
rs9321413	0.89[AFR][1000 genomes]
rs9321414	0.82[AFR][1000 genomes]
rs9483605	0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483608	0.93[AFR][1000 genomes]
rs9483610	0.90[AFR][1000 genomes]
rs9483614	0.88[AFR][1000 genomes]
rs9493696	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493699	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493701	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493705	0.97[AFR][1000 genomes]
rs9493706	0.97[AFR][1000 genomes]
rs9493708	0.96[AFR][1000 genomes]
rs9493713	0.90[AFR][1000 genomes]
rs9493714	0.82[AFR][1000 genomes]
rs9493720	0.89[AFR][1000 genomes]
rs9493722	0.89[AFR][1000 genomes]
rs9493723	0.89[AFR][1000 genomes]
rs9493727	0.82[AFR][1000 genomes]
rs9493728	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134002400-134028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134018400-134019800	Enhancers	Fetal Brain Male	brain
3	chr6:134018400-134020200	Enhancers	Fetal Brain Female	brain
4	chr6:134018800-134019400	Enhancers	HSMM	muscle
5	chr6:134018800-134019600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:134019000-134019400	Enhancers	Psoas Muscle	Psoas
7	chr6:134019000-134019600	Enhancers	Osteobl	bone
8	chr6:134019200-134019600	Enhancers	HSMMtube	muscle
9	chr6:134019200-134020000	Weak transcription	K562	blood
10	chr6:134019200-134020800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:134019200-134022400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:134019200-134022600	Weak transcription	Fetal Stomach	stomach

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