Variant report

Variant	rs9321414
Chromosome Location	chr6:134078590-134078591
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10046175	0.90[AFR][1000 genomes]
rs28446035	0.91[AFR][1000 genomes]
rs56790613	0.88[AFR][1000 genomes]
rs731379	0.81[AFR][1000 genomes]
rs9321413	0.93[AFR][1000 genomes]
rs9483605	0.87[YRI][hapmap]
rs9483608	0.89[AFR][1000 genomes]
rs9483610	0.91[AFR][1000 genomes]
rs9483614	0.94[AFR][1000 genomes]
rs9493702	0.82[AFR][1000 genomes]
rs9493704	0.85[AFR][1000 genomes]
rs9493708	0.85[AFR][1000 genomes]
rs9493713	0.91[AFR][1000 genomes]
rs9493714	0.83[AFR][1000 genomes]
rs9493720	0.93[AFR][1000 genomes]
rs9493722	0.93[AFR][1000 genomes]
rs9493723	0.93[AFR][1000 genomes]
rs9493727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493729	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134068600-134082200	Weak transcription	Aorta	Aorta
2	chr6:134070400-134082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:134072200-134082200	Enhancers	Fetal Lung	lung
4	chr6:134072600-134079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:134072800-134079600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:134073600-134080000	Weak transcription	A549	lung
8	chr6:134076200-134078800	Enhancers	HSMM	muscle
9	chr6:134076200-134079000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:134076200-134079000	Weak transcription	Ovary	ovary
11	chr6:134076400-134079200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:134076400-134079200	Enhancers	Osteobl	bone
13	chr6:134076800-134079200	Enhancers	Adipose Nuclei	Adipose
14	chr6:134077200-134079200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:134077800-134078600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:134077800-134085600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:134078000-134079000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:134078000-134085400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:134078200-134079400	Weak transcription	Fetal Kidney	kidney
20	chr6:134078200-134081400	Weak transcription	NHLF	lung
21	chr6:134078200-134082000	Weak transcription	HSMMtube	muscle
22	chr6:134078200-134082000	Weak transcription	NHDF-Ad	bronchial
23	chr6:134078200-134085600	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:134078400-134078800	Weak transcription	Fetal Stomach	stomach

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