Variant report

Variant	rs9493728
Chromosome Location	chr6:134080748-134080749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134076418..134078236-chr6:134080183..134082934,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10046175	0.92[AFR][1000 genomes]
rs28446035	0.94[AFR][1000 genomes]
rs56790613	0.90[AFR][1000 genomes]
rs731379	0.83[AFR][1000 genomes]
rs9321413	0.95[AFR][1000 genomes]
rs9321414	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483605	0.85[YRI][hapmap]
rs9483608	0.91[AFR][1000 genomes]
rs9483610	0.94[AFR][1000 genomes]
rs9483614	0.96[AFR][1000 genomes]
rs9493702	0.84[AFR][1000 genomes]
rs9493704	0.88[AFR][1000 genomes]
rs9493705	0.82[AFR][1000 genomes]
rs9493706	0.82[AFR][1000 genomes]
rs9493708	0.88[AFR][1000 genomes]
rs9493713	0.94[AFR][1000 genomes]
rs9493714	0.85[AFR][1000 genomes]
rs9493720	0.95[AFR][1000 genomes]
rs9493722	0.95[AFR][1000 genomes]
rs9493723	0.95[AFR][1000 genomes]
rs9493727	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493729	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134068600-134082200	Weak transcription	Aorta	Aorta
2	chr6:134070400-134082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:134072200-134082200	Enhancers	Fetal Lung	lung
4	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:134077800-134085600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:134078000-134085400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:134078200-134081400	Weak transcription	NHLF	lung
8	chr6:134078200-134082000	Weak transcription	HSMMtube	muscle
9	chr6:134078200-134082000	Weak transcription	NHDF-Ad	bronchial
10	chr6:134078200-134085600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:134079000-134081800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:134079200-134080800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:134079200-134081200	Weak transcription	Osteobl	bone
14	chr6:134079200-134081400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:134079200-134082200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:134079200-134084000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:134079400-134080800	Enhancers	Fetal Kidney	kidney
18	chr6:134079400-134081200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:134079600-134084000	Weak transcription	Ovary	ovary
20	chr6:134080000-134082000	Enhancers	A549	lung
21	chr6:134080200-134080800	Weak transcription	Fetal Stomach	stomach
22	chr6:134080400-134081800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:134080400-134082000	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links