Variant report

Variant	rs9493705
Chromosome Location	chr6:134028066-134028067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134020858..134023121-chr6:134025538..134028514,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10046175	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28446035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56790613	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs731379	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9321410	0.84[AFR][1000 genomes]
rs9321413	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9483605	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs9483608	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483610	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483614	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493696	0.89[AFR][1000 genomes]
rs9493697	0.85[AFR][1000 genomes]
rs9493699	0.85[AFR][1000 genomes]
rs9493701	0.89[AFR][1000 genomes]
rs9493702	0.97[AFR][1000 genomes]
rs9493704	0.94[AFR][1000 genomes]
rs9493706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493713	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493714	1.00[AMR][1000 genomes]
rs9493720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493722	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493728	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134002400-134028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134020600-134028600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:134023200-134040400	Weak transcription	Ovary	ovary
4	chr6:134024800-134029400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:134025000-134028600	Enhancers	NHDF-Ad	bronchial
6	chr6:134025000-134028600	Enhancers	Osteobl	bone
7	chr6:134025000-134029000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:134025200-134029000	Enhancers	HSMMtube	muscle
9	chr6:134025200-134029200	Enhancers	HSMM	muscle
10	chr6:134025200-134029200	Enhancers	NHLF	lung
11	chr6:134025400-134028800	Enhancers	NH-A	brain
12	chr6:134026200-134029000	Enhancers	HMEC	breast
13	chr6:134026400-134028400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:134026800-134028600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:134027200-134028400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:134027200-134028400	Weak transcription	Adipose Nuclei	Adipose
17	chr6:134027200-134028400	Weak transcription	Fetal Stomach	stomach
18	chr6:134027400-134028600	Weak transcription	A549	lung
19	chr6:134027400-134029200	Enhancers	Fetal Brain Female	brain
20	chr6:134027600-134028600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:134027800-134028200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:134027800-134028200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:134028000-134029200	Enhancers	Fetal Brain Male	brain

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