Variant report

Variant	rs9493704
Chromosome Location	chr6:134024381-134024382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10046175	0.92[AFR][1000 genomes]
rs28446035	0.94[AFR][1000 genomes]
rs56790613	0.90[AFR][1000 genomes]
rs731379	0.95[AFR][1000 genomes]
rs9321410	0.82[AFR][1000 genomes]
rs9321413	0.92[AFR][1000 genomes]
rs9321414	0.85[AFR][1000 genomes]
rs9483605	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483608	0.96[AFR][1000 genomes]
rs9483610	0.94[AFR][1000 genomes]
rs9483614	0.91[AFR][1000 genomes]
rs9493696	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493699	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493701	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493705	0.94[AFR][1000 genomes]
rs9493706	0.94[AFR][1000 genomes]
rs9493708	0.92[AFR][1000 genomes]
rs9493713	0.94[AFR][1000 genomes]
rs9493714	0.85[AFR][1000 genomes]
rs9493720	0.92[AFR][1000 genomes]
rs9493722	0.92[AFR][1000 genomes]
rs9493723	0.92[AFR][1000 genomes]
rs9493727	0.85[AFR][1000 genomes]
rs9493728	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134002400-134028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134020600-134028600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:134022000-134024400	Flanking Active TSS	K562	blood
4	chr6:134022800-134024400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:134023200-134025200	Weak transcription	Fetal Stomach	stomach
6	chr6:134023200-134025200	Weak transcription	HSMMtube	muscle
7	chr6:134023200-134025200	Weak transcription	NHLF	lung
8	chr6:134023200-134027000	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:134023200-134040400	Weak transcription	Ovary	ovary
10	chr6:134023400-134024800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:134023400-134025200	Weak transcription	HSMM	muscle
12	chr6:134023600-134025000	Weak transcription	Osteobl	bone
13	chr6:134023800-134025000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:134023800-134025000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:134023800-134025000	Weak transcription	NHDF-Ad	bronchial
16	chr6:134024000-134025000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:134024000-134025200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:134024200-134026200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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