Variant report

Variant	rs9493720
Chromosome Location	chr6:134064206-134064207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10046175	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28446035	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56790613	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs731379	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9321413	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9321414	0.93[AFR][1000 genomes]
rs9483605	0.91[YRI][hapmap]
rs9483608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483610	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483614	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493697	0.83[AFR][1000 genomes]
rs9493699	0.83[AFR][1000 genomes]
rs9493702	0.89[AFR][1000 genomes]
rs9493704	0.92[AFR][1000 genomes]
rs9493705	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493706	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493708	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493713	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493727	0.93[AFR][1000 genomes]
rs9493728	0.95[AFR][1000 genomes]
rs9493729	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134059400-134066800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:134062800-134066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:134063000-134064800	Weak transcription	Ovary	ovary
4	chr6:134063000-134065000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:134063000-134066200	Weak transcription	A549	lung
6	chr6:134063000-134066600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:134063000-134066600	Weak transcription	Osteobl	bone
8	chr6:134063000-134069800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:134063000-134070800	Weak transcription	Right Atrium	heart
10	chr6:134063000-134073000	Weak transcription	Fetal Kidney	kidney
11	chr6:134063200-134066800	Weak transcription	K562	blood
12	chr6:134063400-134064600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:134063400-134064800	Weak transcription	Fetal Stomach	stomach
14	chr6:134063600-134066000	Weak transcription	Hela-S3	cervix
15	chr6:134063600-134068800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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