Variant report

Variant	rs28446035
Chromosome Location	chr6:134047426-134047427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10046175	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56790613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs731379	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9321413	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9321414	0.91[AFR][1000 genomes]
rs9483608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483614	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493696	0.81[AFR][1000 genomes]
rs9493697	0.85[AFR][1000 genomes]
rs9493699	0.85[AFR][1000 genomes]
rs9493701	0.81[AFR][1000 genomes]
rs9493702	0.90[AFR][1000 genomes]
rs9493704	0.94[AFR][1000 genomes]
rs9493705	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493706	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493714	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493720	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493722	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493723	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493727	0.91[AFR][1000 genomes]
rs9493728	0.94[AFR][1000 genomes]
rs9493729	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134043200-134052200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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