Variant report

Variant	rs12205960
Chromosome Location	chr6:133953053-133953054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10457608	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10457609	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10782253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10782254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10872410	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872411	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190055	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12191306	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12193686	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12194247	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194817	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12194886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12195892	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196164	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12200438	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201171	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12201623	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201875	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12202735	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203264	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12206565	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206990	0.91[EUR][1000 genomes]
rs12207502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207687	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212162	0.94[EUR][1000 genomes]
rs12212442	0.92[EUR][1000 genomes]
rs12212992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12215554	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215845	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216357	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17062823	0.88[EUR][1000 genomes]
rs1884162	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321410	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483596	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483606	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493679	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493707	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493717	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133944400-133962000	Weak transcription	Fetal Kidney	kidney
2	chr6:133950800-133954000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:133950800-133954600	Enhancers	Hela-S3	cervix
4	chr6:133951200-133954000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:133951400-133953400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:133951600-133953200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:133951600-133954000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:133951600-133954000	Enhancers	Fetal Lung	lung
9	chr6:133951800-133953800	Enhancers	NH-A	brain
10	chr6:133952000-133953800	Enhancers	Osteobl	bone
11	chr6:133952400-133953600	Enhancers	NHDF-Ad	bronchial
12	chr6:133952400-133953800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:133952400-133953800	Enhancers	Ovary	ovary
14	chr6:133952400-133954000	Enhancers	NHLF	lung
15	chr6:133952400-133954600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:133952600-133953800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:133952800-133953400	Enhancers	A549	lung
18	chr6:133952800-133953600	Weak transcription	Placenta	Placenta
19	chr6:133952800-133954200	Weak transcription	HSMMtube	muscle
20	chr6:133952800-133955000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:133952800-133958400	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links