Variant report

Variant	rs12204957
Chromosome Location	chr6:133913571-133913572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10457608	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457609	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10782252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872410	1.00[ASN][1000 genomes]
rs10872411	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12190055	1.00[AFR][1000 genomes]
rs12191306	1.00[AFR][1000 genomes]
rs12193686	1.00[AFR][1000 genomes]
rs12194247	1.00[ASN][1000 genomes]
rs12194817	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12195870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195892	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12196164	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12198984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200438	1.00[ASN][1000 genomes]
rs12201171	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201623	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12201875	1.00[AFR][1000 genomes]
rs12202735	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12203264	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12205960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12206565	1.00[ASN][1000 genomes]
rs12207502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207687	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12212992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215554	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12215845	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12216357	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1884162	1.00[ASN][1000 genomes]
rs9321410	1.00[ASN][1000 genomes]
rs9483596	1.00[ASN][1000 genomes]
rs9483606	1.00[ASN][1000 genomes]
rs9493679	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9493707	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133911200-133914000	Enhancers	HMEC	breast
2	chr6:133911400-133913800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:133911400-133913800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:133911600-133913600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:133911600-133914000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:133912000-133913600	Enhancers	NHEK	skin
7	chr6:133912000-133913800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:133912000-133913800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:133912400-133913800	Weak transcription	Fetal Stomach	stomach
10	chr6:133912400-133915800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:133912400-133925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:133912600-133913600	Enhancers	Osteobl	bone
13	chr6:133912600-133915400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:133912600-133916800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:133912800-133913800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:133912800-133915800	Weak transcription	NHDF-Ad	bronchial
17	chr6:133913000-133914800	Enhancers	A549	lung
18	chr6:133913000-133916800	Weak transcription	NHLF	lung
19	chr6:133913200-133914000	Enhancers	Hela-S3	cervix
20	chr6:133913400-133917400	Enhancers	Fetal Lung	lung

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