Variant report

Variant	rs12203626
Chromosome Location	chr6:147429772-147429773
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12206986	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2328767	1.00[AFR][1000 genomes]
rs58458691	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv522096	chr6:147424880-147443480	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv5524	chr6:147428436-147454371	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147425200-147429800	Weak transcription	Fetal Thymus	thymus
2	chr6:147425200-147430600	Weak transcription	Dnd41	blood
3	chr6:147425800-147430000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:147428000-147430600	Enhancers	Primary T cells from cord blood	blood
5	chr6:147428000-147430800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:147428000-147431000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:147428000-147431000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:147428000-147431800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:147428200-147430600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:147428200-147430600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:147428600-147431000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:147429400-147430600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:147429400-147430800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:147429400-147431600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:147429400-147433000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:147429600-147431400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links