Variant report

Variant	rs58458691
Chromosome Location	chr6:147482687-147482688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147451392..147454217-chr6:147481836..147483819,2	K562	blood:
2	chr6:147481284..147483476-chr6:147542253..147543860,2	K562	blood:
3	chr6:147482480..147485033-chr6:147490242..147491745,2	MCF-7	breast:
4	chr6:147456049..147457635-chr6:147481317..147483132,2	K562	blood:
5	chr6:147477631..147490692-chr6:147521132..147530003,24	K562	blood:
6	chr6:147475725..147486468-chr6:147521132..147528058,22	K562	blood:
7	chr6:147219792..147222119-chr6:147481402..147483994,2	K562	blood:
8	chr6:147211953..147214210-chr6:147481502..147484872,3	K562	blood:
9	chr6:147232830..147236608-chr6:147480889..147484110,6	K562	blood:
10	chr6:147234020..147237797-chr6:147479326..147483886,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12203626	0.89[EUR][1000 genomes]
rs12206986	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147475800-147482800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:147476400-147482800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:147476400-147482800	Weak transcription	NHEK	skin
4	chr6:147478400-147487600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:147478400-147487600	Weak transcription	HMEC	breast
6	chr6:147478400-147487600	Weak transcription	NHLF	lung
7	chr6:147478800-147483200	Weak transcription	Osteobl	bone
8	chr6:147480200-147486000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:147482000-147483800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:147482000-147484200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:147482400-147483000	Flanking Active TSS	K562	blood
12	chr6:147482400-147483400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:147482600-147483000	Enhancers	NH-A	brain
14	chr6:147482600-147483400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:147482600-147483400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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