Variant report

Variant	rs1220544
Chromosome Location	chr3:150594033-150594034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1444198	0.84[JPT][hapmap]
rs16862877	0.81[JPT][hapmap]
rs16862928	0.90[ASN][1000 genomes]
rs67193230	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv877646	chr3:150582992-150641304	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150586400-150597000	Weak transcription	Left Ventricle	heart
2	chr3:150591200-150595000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:150592200-150594400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:150592600-150594200	Enhancers	Brain Anterior Caudate	brain
5	chr3:150592600-150597400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:150593000-150595600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:150593200-150594400	Enhancers	Fetal Heart	heart
8	chr3:150593200-150595800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:150593400-150594600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:150593600-150594400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links