Variant report

Variant	rs1444198
Chromosome Location	chr3:150566614-150566615
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150559675..150563415-chr3:150563767..150567112,4	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10513379	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1220544	0.84[JPT][hapmap]
rs12629256	0.88[EUR][1000 genomes]
rs1444199	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16862877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16862928	0.95[EUR][1000 genomes]
rs17283761	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs2034158	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2037408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2037409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4679986	0.90[ASN][1000 genomes]
rs4680004	0.88[ASN][1000 genomes]
rs4680006	0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs4680007	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs56285716	0.90[ASN][1000 genomes]
rs56659353	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58091102	0.81[ASN][1000 genomes]
rs60107900	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60336215	0.81[EUR][1000 genomes]
rs60979559	0.82[EUR][1000 genomes]
rs61132047	0.86[EUR][1000 genomes]
rs62282691	0.86[ASN][1000 genomes]
rs67193230	0.95[EUR][1000 genomes]
rs6768276	0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6775087	0.89[ASN][1000 genomes]
rs6781091	0.90[ASN][1000 genomes]
rs6783058	0.85[ASN][1000 genomes]
rs73152585	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150565600-150567200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:150566000-150567200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:150566200-150567200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:150566200-150567400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:150566400-150567200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr3:150566400-150567400	Enhancers	HUES6 Cell Line	embryonic stem cell

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