Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150479805..150481364-chr3:150556463..150558092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1444198	0.90[ASN][1000 genomes]
rs1444199	0.90[ASN][1000 genomes]
rs1444200	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16862877	0.92[ASN][1000 genomes]
rs17283761	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034158	0.89[ASN][1000 genomes]
rs2037408	0.88[ASN][1000 genomes]
rs2037409	0.88[ASN][1000 genomes]
rs4679986	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680004	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680006	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680007	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56285716	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56659353	0.93[ASN][1000 genomes]
rs58091102	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60107900	0.88[ASN][1000 genomes]
rs62282691	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6768276	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6775087	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6783058	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73152585	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv818177	chr3:150541363-150566422	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150556800-150558400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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