Variant report
| Variant | rs4679986 |
|---|---|
| Chromosome Location | chr3:150553413-150553414 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1444198 | 0.90[ASN][1000 genomes] |
| rs1444199 | 0.90[ASN][1000 genomes] |
| rs1444200 | 0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16862877 | 0.92[ASN][1000 genomes] |
| rs17283761 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2034158 | 0.89[ASN][1000 genomes] |
| rs2037408 | 0.88[ASN][1000 genomes] |
| rs2037409 | 0.88[ASN][1000 genomes] |
| rs4680004 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4680006 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4680007 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56285716 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56659353 | 0.93[ASN][1000 genomes] |
| rs58091102 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs60107900 | 0.88[ASN][1000 genomes] |
| rs62282691 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6768276 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6775087 | 0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6781091 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6783058 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73152585 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532662 | chr3:150180747-150633414 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 101 gene(s) | inside rSNPs | diseases |
| 2 | nsv818177 | chr3:150541363-150566422 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv3375378 | chr3:150552662-150556960 | ZNF genes & repeats Bivalent Enhancer Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 4 | esv3363296 | chr3:150553112-150556810 | Bivalent Enhancer Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:150550600-150556200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
